For researchers and administrators trying to understand and describe the populations they represent or work with, a necessary and often challenging first step is to identify and then access data. This package provides a ready-to- use catalog of functions that access high-value epidiomiology and public health datasets. While the package caters to cancer population health and NCI Cancer Center data science needs, the data resources are likely of general use to anyone doing this type of work in any field.
Installation
You can install the development version of CARDdealr from GitHub with:
# install.packages("devtools")
devtools::install_github("CARDS-Resources/CARDdealr")Example
This is a basic example which shows you how to solve a common problem:
library(CARDdealr)
cdc_places= src_cdc_places_data()## | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 5% | |==== | 6% | |===== | 7% | |===== | 8% | |====== | 8% | |====== | 9% | |======= | 9% | |======= | 10% | |======= | 11% | |======== | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========= | 14% | |========== | 14% | |========== | 15% | |=========== | 15% | |=========== | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |============== | 21% | |=============== | 21% | |=============== | 22% | |================ | 22% | |================ | 23% | |================ | 24% | |================= | 24% | |================= | 25% | |================== | 25% | |================== | 26% | |=================== | 26% | |=================== | 27% | |=================== | 28% | |==================== | 28% | |==================== | 29% | 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cdc_geo = cdc_places |>
dplyr::mutate(CountyFIPS = integer_to_fips(CountyFIPS))
cdc_geo = tigris::geo_join(co_counties, cdc_geo, 'GEOID', 'CountyFIPS')
pal <- leaflet::colorNumeric("Blues", cdc_geo$CSMOKING_AdjPrev)
popup <- paste0("GEOID: ", cdc_geo$CountyName,
"<br>", "Smokers: ", cdc_geo$CSMOKING_AdjPrev)
leaflet::leaflet(cdc_geo) |>
leaflet::addTiles() |>
leaflet::addPolygons(fillColor = ~pal(cdc_geo$CSMOKING_AdjPrev),
fillOpacity = 0.7,
weight = 0.2,
smoothFactor = 0.2,
popup = popup) |>
leaflet::addLegend(position='bottomright',pal,cdc_geo$CSMOKING_AdjPrev)
Available datasets
available_datasets() |> knitr::kable()| name | accessor |
|---|---|
| American College of Radiology Lung Cancer Screening Registry (LCSR) dataset | src_acr_lung_cancer_screening_data |
| Bureau of Labor Statistics Unemployment data | src_bls_unemployment_data |
| Behavioral Risk Factor Surveillance System (BRFSS) | src_brfss |
| CDC Places | src_cdc_places_data |
| EPA Toxic Release Inventory (TRI) | src_epa_tri_data |
| Environmental Protection Agency Superfund | src_epa_superfund_data |
| FDA Certified Mammography Facilities Dataset | src_fda_mammography_data |
| Health Resources and Services Administration (HRSA) facilities | src_hrsa_facility_data |
| National Plan & Provider Enumeration System (NPPES) GI providers | src_nppes_gi_data |
| National Plan & Provider Enumeration System (NPPES) Oncology Providers | src_nppes_onco_data |